Infectious Disease and Microbiome Program, Infectious Disease and Microbiome

Goering ER, Clatworthy AE, Parada-Kusz M, Bagnall J, Hung DT. Kmo restricts Salmonella in a whole organism infection model by promoting macrophage lysosomal acidification through kainate receptor antagonism. PLoS pathogens. 2025;21(10):e1013273. doi:10.1371/journal.ppat.1013273Google ScholarPubMedDOI

Cartagena AJ, Taylor KL, Smith JT, et al. The carbapenem inoculum effect provides insight into the molecular mechanisms underlying carbapenem resistance in Enterobacterales. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.05.23.541813Google ScholarPubMedDOI

Lamas B, Richard ML, Leducq V, et al. CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands. Nat Med. 2016;22(6):598-605. doi:10.1038/nm.4102Google ScholarPubMedDOI

Rothhammer V, Mascanfroni ID, Bunse L, et al. Type I interferons and microbial metabolites of tryptophan modulate astrocyte activity and central nervous system inflammation via the aryl hydrocarbon receptor. Nat Med. 2016;22(6):586-97. doi:10.1038/nm.4106Google ScholarPubMedDOI

David LA, Materna AC, Friedman J, et al. Erratum to: Host lifestyle affects human microbiota on daily timescales. Genome Biol. 2016;17(1):117. doi:10.1186/s13059-016-0988-yGoogle ScholarPubMedDOI

Rooks MG, Garrett WS. Gut microbiota, metabolites and host immunity. Nat Rev Immunol. 2016;16(6):341-52. doi:10.1038/nri.2016.42Google ScholarPubMedDOI

Pardee K, Green AA, Takahashi MK, et al. Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components. Cell. 2016;165(5):1255-66. doi:10.1016/j.cell.2016.04.059Google ScholarPubMedDOI

Desjardins CA, Cohen KA, Munsamy V, et al. Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance. Nat Genet. 2016;48(5):544-51. doi:10.1038/ng.3548Google ScholarPubMedDOI

Muñoz JF, Gauthier GM, Desjardins CA, et al. The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia. PLoS Genet. 2015;11(10):e1005493. doi:10.1371/journal.pgen.1005493Google ScholarPubMedDOI